I'm assuming that "I have imported all the methods" means you've imported all the LCIA methods from the openLCA nexus? If so, the impact factors in all these methods use openLCA reference flows (e.g., Flows/Elementary flows/Emission to air/unspecified/Carbon dioxide = 1 kg carbon dioxide equivalent). If the flows in your model use a different set of flow names (e.g., Emissions to air/inorganic emissions to air/Carbon dioxide), then the nexus LCIA methods won't work. It's hard to say exactly what is going on here given the mix of ecoinvent/gabi/openlca tools/data.