Hi Mathias,
The processes in the EN15804 add-on have waste contributions, but of course not all proceses, only those where the flow is a final waste flow. If you make a small system, then you maybe do not have processes with final waste flows. Having system processes is a good suggestion, it is less transparent but if we provide the unit processes in addition users can still check. We are going to release a small update soon, and will also provide the system processes then.
If you want, you can share here why you think you should have waste indicator results (edit your question and add pictures), or send me a direct mail (via nexus). Thank you!