Whenever there is an uncertainty inside an exchange that is used in the product system, it will be varied as well and contribute to the overall uncertainty. This is usually the case for the unit process databases from ecoinvent, where nearly all exchanges have uncertainty data (some reasonable and some unreasonable) by ecoinvent.
I case you want to only vary the uncertainty of your own foreground processes, you can either use the ecoinvent system processes in the background (fully aggregated and without any uncertainty data), or you can delete all uncertainties in one of your copied ecoinvent unit processes databases with the following SQL command and afterwards insert your foreground uncertainties or import your foreground processes/models.
UPDATE
TBL_EXCHANGES
SET
DISTRIBUTION_TYPE = NULL,
PARAMETER1_VALUE = NULL,
PARAMETER2_VALUE = NULL,
PARAMETER3_VALUE = NULL;